Repair startup FK recovery and paired turn runtime fixes

src/db/bootstrap.ts

@@ -3,6 +3,7 @@ import fs from 'fs';
 import path from 'path';
 
 import { ASSISTANT_NAME, STORE_DIR } from '../config.js';
+import { logger } from '../logger.js';
 import { applyBaseSchema } from './base-schema.js';
 import { applySchemaMigrations } from './schema.js';
 
@@ -10,6 +11,19 @@ function setForeignKeys(database: Database, enabled: boolean): void {
   database.exec(`PRAGMA foreign_keys = ${enabled ? 'ON' : 'OFF'}`);
 }
 
+function pruneOrphanTaskRunLogs(database: Database): number {
+  const result = database
+    .prepare(
+      `DELETE FROM task_run_logs
+       WHERE NOT EXISTS (
+         SELECT 1 FROM scheduled_tasks
+         WHERE scheduled_tasks.id = task_run_logs.task_id
+       )`,
+    )
+    .run();
+  return result.changes;
+}
+
 function assertNoForeignKeyViolations(database: Database): void {
   const violations = database
     .prepare('PRAGMA foreign_key_check')
@@ -35,8 +49,15 @@ export function initializeDatabaseSchema(database: Database): void {
   applySchemaMigrations(database, {
     assistantName: ASSISTANT_NAME,
   });
+  const prunedTaskRunLogs = pruneOrphanTaskRunLogs(database);
   setForeignKeys(database, true);
   assertNoForeignKeyViolations(database);
+  if (prunedTaskRunLogs > 0) {
+    logger.warn(
+      { count: prunedTaskRunLogs },
+      'Pruned orphan task_run_logs rows during database initialization',
+    );
+  }
 }
 
 export function openPersistentDatabase(): Database {